1. DUAN R, GAO L, GAO Y, et al. Evaluation and comparison of Multi-omics data integration methods for cancer Subtyping[J]. PLOS Computational Biology, 2021, 17(8): e1009224. (SCI)

2. XU H, YE Y, DUAN R, et al, 2024. Beaconet: A Reference-Free Method for Integrating Multiple Batches of Single-Cell Transcriptomic Data in Original Molecular Space[J/OL]. Advanced Science, 11(26): 2306770. (SCI)

3. DUAN R, CAO W, GUO M, et al. Genome-Phenome Association Prediction Using Weighted Deep Matrix Factorization with a Multisource Graph Attention Network[J]. Quantitative Biology. (Accepted, SCI)

4. DUAN R, GAO L, XU H, et al. CEPICS: A Comparison and Evaluation Platform for Integration Methods in Cancer Subtyping[J]. Frontiers in Genetics, 2019, 10: 966. (SCI)

5. XU H, GAO L, HUANG M, DUAN R. A network embedding based method for partial Multi-omics integration in cancer Subtyping[J]. Methods, 2021, 192: 67–76. (SCI)

6. WANG Q, GUO M, CHEN J, DUAN R. A gene regulatory network inference model based on pseudo-siamese network[J]. BMC Bioinformatics, 2023, 24(1): 163. (SCI)

7. WANG B, MA X, XIE M, WU Y, WANG Y, DUAN R, et al. CBP-JMF: An Improved Joint Matrix Tri-Factorization Method for Characterizing Complex Biological Processes of Diseases[J]. Frontiers in Genetics, 2021, 12: 386. (SCI)

8. 郭茂祖, 周遨宇, 段然*. 融合多实例学习与注意力机制的异构体功能预测方法[J]. 智能系统学报, 2025, 20(6):1508-1519. (北大核心期刊)

9. 马毅, 郭杏莉, 孙宇彤, 苑倩倩, 任阳, 段然, 高琳. 基于HeteSim的疾病关联长非编码RNA预测[J]. 计算机研究与发展, 2019, 56(9): 1889–1896. (北大核心期刊)

10. 专利：一种基因调控网络的预测方法及预测系统

11. 专利：基于网络表示学习的不完整多组学数据集成方法

12. 软件著作权：NCIC数据集成癌症亚型分类工具包软件